phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

基本信息

属性	值
类别	downstream-analysis
难度	⭐⭐ 中级
语言	R
GitHub Stars	643
标签	R, diversity, visualization, amplicon

链接

• 📦 代码仓库: https://github.com/joey711/phyloseq
• 🏠 主页: http://joey711.github.io/phyloseq/
• 📄 论文: https://doi.org/10.1371/journal.pone.0061217

安装

# R
BiocManager::install('phyloseq')

简介

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

使用示例

📝 更多使用示例请参考官方文档。

参考资源

• 📖 官方文档: https://joey711.github.io/phyloseq/
• 🎓 教程: https://joey711.github.io/phyloseq/phyloseq-quick-start-demo.html
• 📄 论文: McMurdie & Holmes (2013) phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data. PLOS ONE. DOI: 10.1371/journal.pone.0061217

相关工具

• DESeq2
• ANCOM-BC
• microeco

相关概念

• Compositional Data Analysis

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最后更新: 2026-03-30