Bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

基本信息

属性	值
类别	taxonomic-classification
难度	⭐⭐ 中级
语言	C++
GitHub Stars	339
标签	abundance-estimation, kraken, bayesian

链接

• 📦 代码仓库: https://github.com/jenniferlu717/Bracken
• 🏠 主页: http://ccb.jhu.edu/software/bracken/index.shtml
• 📄 论文: https://doi.org/10.7554/eLife.39915

安装

conda install -c bioconda bracken

简介

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

使用示例

📝 更多使用示例请参考官方文档。

参考资源

• 📖 官方文档: https://github.com/jenniferlu717/Bracken
• 🎓 教程: https://ccb.jhu.edu/software/bracken/index.shtml?t=manual
• 📄 论文: Lu et al. (2017) Bracken: estimating species abundance in metagenomics data. PeerJ Computer Science. DOI: 10.7717/peerj-cs.104

相关工具

• Kraken 2
• MetaPhlAn 4

相关概念

• Functional Vs Taxonomic

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最后更新: 2026-03-30