DESeq2
Differential expression of RNA-seq data using the Negative Binomial
基本信息
| 属性 | 值 |
|---|---|
| 类别 | downstream-analysis |
| 难度 | ⭐⭐ 中级 |
| 语言 | R |
| GitHub Stars | 455 |
| 标签 | R, differential-abundance, statistical, negative-binomial |
链接
- 📦 代码仓库: https://github.com/mikelove/DESeq2
- 🏠 主页: https://bioconductor.org/packages/DESeq2
- 📄 论文: https://doi.org/10.1186/s13059-014-0550-8
安装
bash
# R
BiocManager::install('DESeq2')简介
Differential expression of RNA-seq data using the Negative Binomial
使用示例
📝 更多使用示例请参考官方文档。
参考资源
- 📖 官方文档: https://bioconductor.org/packages/release/bioc/html/DESeq2.html
- 🎓 教程: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html
- 📄 论文: Love et al. (2014) Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology. DOI: 10.1186/s13059-014-0550-8
相关工具
- ANCOM-BC
- ALDEx2
- edgeR
相关概念
最后更新: 2026-03-30